Stem-loop pab-MIR11529a

Accession

MI0037005

Description

Picea abies pab-MIR11529a precursor miRNA

Sequence

4277 reads, 411.0 reads per million, 94 experiments

cugcuaugcuguguucuUCUUAUCUUUGAAAGUGCUAGCaauuuuuauagcgauuuugugcuagcaauuuuuauagcgauuuuguagaaguugcucgcacuuauaaauaaaagacgaagcucaagcaaaucgcuguauaaauagcGAGCACUUCAAAGAGAAGAAGagcagaacguggcag
((((((((.(.((((((((((.((((((((.(((((.((.((((.(((((((((((.((((.((((((((((((((.....)))))))))))))).))))..................((....))))))))))))).)))).)).))))))))))))).)))))))))).).))))))))

Structure

        c g          A        A     A  a    u           -------------------------u    u              c 
cugcuaug u uguucuUCUU UCUUUGAA GUGCU GC auuu uauagcgauuu                          gugc agcaauuuuuauag g
|||||||| | |||||||||| |||||||| ||||| || |||| |||||||||||                          |||| |||||||||||||| a
gacggugc a acgaGAAGAA AGAAACUU CACGA cg uaaa augucgcuaaa                          cacg ucguugaagauguu u
        a g          G        -     G  a    u           cgaacucgaagcagaaaauaaauauu    c              u 

Annotation confidence Medium

Genome context

MA_12480: 34416-34596 [-]

Mature pab-miR11529a-5p

• Accession: MIMAT0045103
• Description: Picea abies pab-miR11529a-5p mature miRNA
• Sequence: 18 - UCUUAUCUUUGAAAGUGCUAGC - 39
• Evidence: experimental ; Illumina [1]

Mature pab-miR11529a-3p

• Accession: MIMAT0057764
• Description: Picea abies pab-miR11529a-3p mature miRNA
• Sequence: 146 - GAGCACUUCAAAGAGAAGAAG - 166
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918