Stem-loop pab-MIR11529c

Accession

MI0037007

Description

Picea abies pab-MIR11529c precursor miRNA

Sequence

4391 reads, 437.0 reads per million, 93 experiments

gcaacugcuaggcugugcucuUCUUAUCUUUGAAAGUGCUAGCaauuuuuauagcgauuuuguauaaguuguucgcacuuauaaagaaaaagaaaagauaaagcucaagcaaaucgcugcagaaauugcGAGCACUUCAAAGAGAAGAAGagcacauuguggcagaaauugu
((((((((((.(.((((((((((((.((((((((.(((((.(((((((((.(((((((((.((...((((..((...(((.........)))....))...))))...))))))))))).))))))))).))))))))))))).)))))))))))).).))))))...))))

Structure

    ---      g c            A        A     A         a         u  aua    -gu  -gca   aua 
gcaa   cugcua g ugugcucuUCUU UCUUUGAA GUGCU GCaauuuuu uagcgauuu gu   aguu   uc    cuu   a
||||   |||||| | |||||||||||| |||||||| ||||| ||||||||| ||||||||| ||   ||||   ||    |||   a
uguu   gacggu u acacgaGAAGAA AGAAACUU CACGA cguuaaaga gucgcuaaa cg   ucga   ag    gaa   g
    aaa      g u            G        -     G         c         -  aac    aau  aaaa   aaa 

Annotation confidence Medium

Genome context

MA_7555626: 676-847 [-]

Mature pab-miR11529c-5p

• Accession: MIMAT0045105
• Description: Picea abies pab-miR11529c-5p mature miRNA
• Sequence: 22 - UCUUAUCUUUGAAAGUGCUAGC - 43
• Evidence: experimental ; Illumina [1]

Mature pab-miR11529c-3p

• Accession: MIMAT0057766
• Description: Picea abies pab-miR11529c-3p mature miRNA
• Sequence: 130 - GAGCACUUCAAAGAGAAGAAG - 150
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918