Stem-loop pab-MIR11531

Accession

MI0037009

Description

Picea abies pab-MIR11531 precursor miRNA

Sequence

63009 reads, 3472.0 reads per million, 102 experiments

gaggccaaaacucaacaucuaaaUCUUUCGAGUUUACUGGGCUguugcgcagagggaucaugcuuguuuaugauuacuugcccaauaacuggcauccuuaucucaauugcaauaaagggcaaucgagauaaggaugcccacuggguaagaguacucuuaaacuagccaccuuucugaucccucugugcuaaagcccaguaaccucacaagauuUCGAUGUUGAAUUUUGGCCUC
((((((((((.((((((((.(((((((..(((.((((((((((...((((((((((((((.(((.(((((.((.((((((((((......((((((((((((((.(((((........))))).))))))))))))))...)))))..))))).)).))))).)))........))))))))))))))...)))))))))).)))..))))))).)))))))).))))))))))

Structure

          c        u       UC   U          guu              -------u   u     u  u     --     auaacu              a     aau 
gaggccaaaa ucaacauc aaaUCUU  GAG UUACUGGGCU   gcgcagagggauca        gcu guuua ga uacuu  gccca      ggcauccuuaucuc auugc   a
|||||||||| |||||||| |||||||  ||| ||||||||||   ||||||||||||||        ||| ||||| || |||||  |||||      |||||||||||||| |||||    
CUCCGGUUUU AGUUGUAG Uuuagaa  cuc aaugacccga   cgugucucccuagu        cga caaau cu augag  ugggu      ccguaggaauagag uaacg   a
          A        C       ca   c          aau              cuuuccac   u     u  c     aa     ---cac              c     gga 

Annotation confidence Low

Genome context

MA_92693: 9048-9281 [+]

Mature pab-miR11531-5p

• Accession: MIMAT0045107
• Description: Picea abies pab-miR11531-5p mature miRNA
• Sequence: 24 - UCUUUCGAGUUUACUGGGCU - 43
• Evidence: experimental ; Illumina [1]

Mature pab-miR11531-3p

• Accession: MIMAT0057768
• Description: Picea abies pab-miR11531-3p mature miRNA
• Sequence: 214 - UCGAUGUUGAAUUUUGGCCUC - 234
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918