Stem-loop pab-MIR482x

Accession

MI0037015

Description

Picea abies pab-MIR482x precursor miRNA

Literature search

2 open access papers mention pab-MIR482x
(6 sentences)

Sequence

8699 reads, 399.0 reads per million, 98 experiments

agugauugaugcgucuaauacucugaUUUGGUCAGAGUCUCUUAAGUUuguugagggauucauaucuaaguugauucccugaacaauuUUGAGAAACUGUGAGCCAAAUCacaauaucaugcauacaucacu
((((((..((((((...(((...(((((((((((.(((.(((((((.(((((.(((((.(((.........))).))))).))))).))))))).))).))).))))))))...))).))))))..))))))

Structure

      ug      cua   cuc        -   G   C       U     g     u   uau 
agugau  augcgu   aua   ugaUUUGG UCA AGU UCUUAAG Uuguu aggga uca   c
||||||  ||||||   |||   |||||||| ||| ||| ||||||| ||||| ||||| |||   u
ucacua  uacgua   uau   aCUAAACC AGU UCA AGAGUUu aacaa ucccu agu   a
      ca      --c   aac        G   G   A       u     g     u   uga 

Annotation confidence High

Genome context

MA_2918883: 41-172 [+]

Mature pab-miR482x-5p

• Accession: MIMAT0057771
• Description: Picea abies pab-miR482x-5p mature miRNA
• Sequence: 27 - UUUGGUCAGAGUCUCUUAAGUU - 48
• Evidence: experimental ; unknown

Mature pab-miR482x-3p

• Accession: MIMAT0045113
• Description: Picea abies pab-miR482x-3p mature miRNA
• Sequence: 89 - UUGAGAAACUGUGAGCCAAAUC - 110
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918