Stem-loop pab-MIR11487c

Accession

MI0037017

Description

Picea abies pab-MIR11487c precursor miRNA

Sequence

1298108 reads, 52265.0 reads per million, 102 experiments

cagcgcaggagaagaggaggcacacUGAGAAGGCGAUCAACAUGACaaggauucauugcugcugcggcugaaugauuuugugguCAUAUUGAUCGCCUUUUCAGUcugccucuuguccccgucaauccugaucug
(((..((((((((.((((((((.(((((((((((((((((.(((((..(((.(((((.(.((....)).)))))).)))...))))).))))))))))))))))).)))))))).).....))..)))))..)))

Structure

   cg     --  ----- g        c                 C     -aa   u     g u  u 
cag  cagga  ga     a aggaggca acUGAGAAGGCGAUCAA AUGAC   gga ucauu c gc g
|||  |||||  ||     | |||||||| ||||||||||||||||| |||||   ||| ||||| | ||  
guc  guccu  cu     u uucuccgu UGACUUUUCCGCUAGUU UACug   uuu aguaa g cg c
   ua     aa  gcccc g        c                 A     gug   u     - u  g 

Annotation confidence High

Genome context

MA_57341: 18676-18810 [-]

Mature pab-miR11487c-5p

• Accession: MIMAT0045115
• Description: Picea abies pab-miR11487c-5p mature miRNA
• Sequence: 26 - UGAGAAGGCGAUCAACAUGAC - 46
• Evidence: experimental ; Illumina [1]

Mature pab-miR11487c-3p

• Accession: MIMAT0057773
• Description: Picea abies pab-miR11487c-3p mature miRNA
• Sequence: 85 - CAUAUUGAUCGCCUUUUCAGU - 105
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918