Stem-loop pab-MIR11533a

Accession

MI0037018

Description

Picea abies pab-MIR11533a precursor miRNA

Sequence

196 reads, 109.0 reads per million, 36 experiments

gcauuauuggcugccguuuagcaugauauaggUGAUAAGUUUCUCAUCUUCuuccucacguuacaauauccggcgccguuaagacuaaaucucuguucacccacccgaagaagaUGAGAAUUAUCAUCUGUAUGgugaaaaacggcccacuguacuugc
(((.((((((..(((((((..(((.(((((((((((((..((((((((((((((....((((.........)))).......(((.........))).........))))))))))))))))))))))))))).)))..))))))))))..)))..)))

Structure

   -u   --   cu       ag   g             GU              ---------------------------cuca    aca 
gca  uau  ugg  gccguuu  cau auauaggUGAUAA  UUCUCAUCUUCuuc                               cguu   a
|||  |||  |||  |||||||  ||| |||||||||||||  ||||||||||||||                               ||||   u
cgu  aug  acc  cggcaaa  gug UAUGUCUACUAUU  AAGAGUagaagaag                               gcgg   a
   uc   uc   --       aa   G             --              cccacccacuugucucuaaaucagaauugcc    ccu 

Annotation confidence Medium

Genome context

MA_10436244: 7363-7521 [-]

Mature pab-miR11533a-5p

• Accession: MIMAT0057774
• Description: Picea abies pab-miR11533a-5p mature miRNA
• Sequence: 33 - UGAUAAGUUUCUCAUCUUC - 51
• Evidence: experimental ; unknown

Mature pab-miR11533a-3p

• Accession: MIMAT0045116
• Description: Picea abies pab-miR11533a-3p mature miRNA
• Sequence: 115 - UGAGAAUUAUCAUCUGUAUG - 134
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918