Stem-loop pab-MIR11535

Accession

MI0037020

Description

Picea abies pab-MIR11535 precursor miRNA

Sequence

113245 reads, 3467.0 reads per million, 102 experiments

aaaugcgcugcuucccauaaaucgUGGCAUCCAAAGCGGUCUCACCccuacugauuccacaaggaguauagcagcagcccugugagaguagaccagcugauggcgaacgucuuaaaauguacuguuaugccugaaggacagaguuugcagaagaggccugaucaagugguugguuaguacgggUGAGCCGCUUUUGGAUGUGACGauuuggaggauauagcuugcauuu
((((((((((..(((..((((((((.(((((((((((((.(((((((.((((((((((((..((.(((((((((..((....(((((((.(.(((.....))))..)).)))))....)).)))))))))))....(((((.((((.......))))))).))..))))..)))))))).))))))))))).))))))))).))))))))..)))..))))..))))))

Structure

      --    cu   ca        G         -    U       c        --    -------------------------------aa  a         ca  ccug     -  -a a   g 
aaaugc  gcug  ucc  uaaaucgU GCAUCCAAA GCGG CUCACCc uacugauu  ccac                                 gg guauagcag  gc    ugaga gu  g cca c
||||||  ||||  |||  |||||||| ||||||||| |||| ||||||| ||||||||  ||||                                 || |||||||||  ||    ||||| ||  | ||| u
uuuacg  cgau  agg  guuuaGCA UGUAGGUUU CGCC GAGUggg augauugg  ggug                                 uc cguauuguc  ug    auucu ca  c ggu g
      uu    au   ag        G         U    -       c        uu    aacuaguccggagaagacguuugagacaggaag  -         -a  uaaa     g  ag -   a 

Annotation confidence High

Genome context

MA_10435611: 11311-11539 [+]

Mature pab-miR11535-5p

• Accession: MIMAT0057776
• Description: Picea abies pab-miR11535-5p mature miRNA
• Sequence: 25 - UGGCAUCCAAAGCGGUCUCACC - 46
• Evidence: experimental ; unknown

Mature pab-miR11535-3p

• Accession: MIMAT0045118
• Description: Picea abies pab-miR11535-3p mature miRNA
• Sequence: 184 - UGAGCCGCUUUUGGAUGUGACG - 205
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918