Stem-loop pab-MIR11537

Accession

MI0037023

Description

Picea abies pab-MIR11537 precursor miRNA

Sequence

195 reads, 25.0 reads per million, 59 experiments

uuuuuagcuaggaucuuagaaauaUGAUCAGUAUUGCCUUGGAUGuagggaagauaaaugagagcuagaggcggggaagagggaggguuuuuuuuuggauuauagaauggagggcugaguagaaauauuuauuccaucccuacgUCCAAGUCAUUACUGAUCAUAuuucuacgauccuggcuaaaaa
.((((((((((((((.(((((((((((((((((.((.((((((((((((((.............(((....(.(((((((((.....))))))))).)....)))......(((.((((((....)))))).))).)))))))))))))).)).))))))))))))))))).)))))))))))))).

Structure

u              u                 U  C              ------------------agauaaaugagag   gagg g         g 
 uuuuagcuaggauc uagaaauaUGAUCAGUA UG CUUGGAUGuaggga                               cua    c gggaagagg a
 |||||||||||||| ||||||||||||||||| || ||||||||||||||                               |||    | ||||||||| g
 aaaaucgguccuag aucuuuAUACUAGUCAU AC GAACCUgcaucccu                               gau    g uuuuuuuuu g
a              c                 U  U              accuuauuuauaaagaugagucgggagguaa   auua g         g 

Annotation confidence High

Genome context

MA_10436765: 13625-13811 [+]

Mature pab-miR11537-5p

• Accession: MIMAT0045121
• Description: Picea abies pab-miR11537-5p mature miRNA
• Sequence: 25 - UGAUCAGUAUUGCCUUGGAUG - 45
• Evidence: experimental ; Illumina [1]

Mature pab-miR11537-3p

• Accession: MIMAT0057778
• Description: Picea abies pab-miR11537-3p mature miRNA
• Sequence: 145 - UCCAAGUCAUUACUGAUCAUA - 165
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918