Stem-loop pab-MIR11539a

Accession

MI0037025

Description

Picea abies pab-MIR11539a precursor miRNA

Sequence

230 reads, 31.0 reads per million, 54 experiments

uagguagcauugaaugcUGCAGCAGGUGGAUUAUAGACaaugaaaaagcugcagauacagucuucaucugaugcagcauuuccguugCCUAUAAUCCACCUGCUACAGcauucacugcuuagccug
(((((((((.(((((((((.((((((((((((((((.(((((.(((.((((((....(((.......))).)))))).))).))))).)))))))))))))))).))))))))).))))..)))))

Structure

     --    u         C                A     a   a      gaua   uc 
uaggu  agca ugaaugcUG AGCAGGUGGAUUAUAG Caaug aaa gcugca    cag  u
|||||  |||| ||||||||| |||||||||||||||| ||||| ||| ||||||    |||  u
guccg  ucgu acuuacGAC UCGUCCACCUAAUAUC guugc uuu cgacgu    guc  c
     au    c         A                C     c   a      ---a   ua 

Annotation confidence Medium

Genome context

MA_9905154: 65-190 [-]

Mature pab-miR11539a-5p

• Accession: MIMAT0045123
• Description: Picea abies pab-miR11539a-5p mature miRNA
• Sequence: 18 - UGCAGCAGGUGGAUUAUAGAC - 38
• Evidence: experimental ; Illumina [1]

Mature pab-miR11539a-3p

• Accession: MIMAT0057779
• Description: Picea abies pab-miR11539a-3p mature miRNA
• Sequence: 88 - CCUAUAAUCCACCUGCUACAG - 108
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918