Stem-loop pab-MIR11540

Accession

MI0037026

Description

Picea abies pab-MIR11540 precursor miRNA

Sequence

46864 reads, 1479.0 reads per million, 100 experiments

cuuggcguauaacaauuauuuggagauauuccucaggcuucggcacgUUACCCAACCUGGAGACACUGUcgcucggacguaaucuguuggguggaucgauuccucaagaaugaggaaucgauccacccagcagauuaagucagagagacaaugucuccagguuggguaacaUGCCGAAGCCUGGAGGAAUAUCuccagagaaauuguuauacgccaag
(((((((((((((((((.(((((((((((((((((((((((((((.(((((((((((((((((((.((((.(((.(((.(((((((((((((((((((((((((((....))))))))))))))))))))))))))).))).))).)))).))))))))))))))))))).))))))))))).))))))))))))))))..)))))))))))))))))

Structure

                 -a                -           c                   C    g   g   g                           a 
cuuggcguauaacaauu  uuuggagauauuccuc aggcuucggca gUUACCCAACCUGGAGACA UGUc cuc gac uaaucuguuggguggaucgauuccuca g
|||||||||||||||||  |||||||||||||||| ||||||||||| ||||||||||||||||||| |||| ||| ||| |||||||||||||||||||||||||||  
gaaccgcauauuguuaa  agaccuCUAUAAGGAG UCCGAAGCCGU caauggguuggaccucugu acag gag cug auuagacgacccaccuagcuaaggagu a
                 ag                G           a                   a    a   a   a                           a 

Annotation confidence Low

Genome context

MA_38414: 14707-14924 [-]

Mature pab-miR11540-5p

• Accession: MIMAT0057780
• Description: Picea abies pab-miR11540-5p mature miRNA
• Sequence: 48 - UUACCCAACCUGGAGACACUGU - 69
• Evidence: experimental ; unknown

Mature pab-miR11540-3p

• Accession: MIMAT0045124
• Description: Picea abies pab-miR11540-3p mature miRNA
• Sequence: 172 - UGCCGAAGCCUGGAGGAAUAUC - 193
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918