Stem-loop pab-MIR11543

Accession

MI0037032

Description

Picea abies pab-MIR11543 precursor miRNA

Sequence

682 reads, 48.0 reads per million, 59 experiments

ugucauacacuuguuauugcugccaUGCUGCCUCACUACAUCAUGGuugcacuguguuucuguagaccucugcugacaacaaaagaaacauggugcgaccaugaugucgugaggaagcacgACAACAAUGACAAGUGUAUGACA
(((((((((((((((((((.((.(.((((.((((((.((((((((((((((((((((((((((((....))))..........)))))))))))))))))))))))).)))))).)))).).)).)))))))))))))))))))

Structure

                   c  c a    G      U                        ----------    a 
ugucauacacuuguuauug ug c UGCU CCUCAC ACAUCAUGGuugcacuguguuucu          guag c
||||||||||||||||||| || | |||| |||||| ||||||||||||||||||||||||          ||||  
ACAGUAUGUGAACAGUAAC AC g acga ggagug uguaguaccagcgugguacaaaga          cguc c
                   A  A c    a      c                        aaacaacagu    u 

Annotation confidence Low

Genome context

MA_377919: 525-668 [+]

Mature pab-miR11543-5p

• Accession: MIMAT0045130
• Description: Picea abies pab-miR11543-5p mature miRNA
• Sequence: 26 - UGCUGCCUCACUACAUCAUGG - 46
• Evidence: experimental ; Illumina [1]

Mature pab-miR11543-3p

• Accession: MIMAT0057784
• Description: Picea abies pab-miR11543-3p mature miRNA
• Sequence: 122 - ACAACAAUGACAAGUGUAUGACA - 144
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918