miRBase entry: pab-MIR3627j

Stem-loop pab-MIR3627j


Accession
MI0037034
Description
Picea abies pab-MIR3627j precursor miRNA


Sequence

300 reads, 49.0 reads per million, 39 experiments
uuucUGGCGCAGAAGAAAUGACACUGuagucauauauccucaucauucaaucaauuugagaugacgaaggaauaaaauguaugaaggcaGUGUCAUUUCGCUGCACCUGAaa
.(((.((.((((..(((((((((((((..((((((((((((.((((((((.....)))).)))).).))))......)))))))..))))))))))))).)))).)).))).

Structure
u   U  C    AA             ag       ------    - a    -    u 
 uuc GG GCAG  GAAAUGACACUGu  ucauaua      uccu c ucau ucaa c
 ||| || ||||  |||||||||||||  |||||||      |||| | |||| |||| a
 aAG CC CGUC  CUUUACUGUGacg  aguaugu      agga g agua aguu a
a   U  A    -G             ga       aaaaua    a c    g    u 


Annotation confidence High
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Genome context
MA_551792: 3359-3470 [+]

Database links

Mature pab-miR3627j-5p

Accession MIMAT0045132
Description Picea abies pab-miR3627j-5p mature miRNA
Sequence 5 - UGGCGCAGAAGAAAUGACACUG - 26
Evidence experimental
Illumina [1]

Mature pab-miR3627j-3p

Accession MIMAT0057786
Description Picea abies pab-miR3627j-3p mature miRNA
Sequence 90 - GUGUCAUUUCGCUGCACCUGA - 110
Evidence experimental
unknown

References

  1. PubMed ID: 26318183
    Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
    "Xia R, Xu J, Arikit S, Meyers BC"
    "Mol Biol Evol (2015) 32:2905-2918