Stem-loop pab-MIR11546a

Accession

MI0037036

Description

Picea abies pab-MIR11546a precursor miRNA

Sequence

42970 reads, 2913.0 reads per million, 101 experiments

caaccacuacaaacuggaaucUGGUACGGGUUGAAGUAGCACCucucccuggcuuggcugcugcuucuuaucacaggauccguugcaauggccaaaugaggUGUUAUUUCAACCCCUACCAGgcuccaauaggguug
(((((.(((.....((((.(((((((.((((((((((((((((((....(((((..((.((.(.((((......)))).).)).))...)))))...)))))))))))))))))).))))))).)))).))))))))

Structure

     a   caaac    a       C                  uccc     -ug  u  u c    ua 
caacc cua     ugga ucUGGUA GGGUUGAAGUAGCACCuc    uggcu   gc gc g uucu  u
||||| |||     |||| ||||||| ||||||||||||||||||    |||||   || || | ||||   
guugg gau     accu gGACCAU CCCAACUUUAUUGUggag    accgg   cg ug c agga  c
     -   ----a    c       C                  -uaa     uaa  u  c u    ca 

Annotation confidence Medium

Genome context

MA_181272: 16768-16904 [-]

Mature pab-miR11546a-5p

• Accession: MIMAT0045134
• Description: Picea abies pab-miR11546a-5p mature miRNA
• Sequence: 22 - UGGUACGGGUUGAAGUAGCACC - 43
• Evidence: experimental ; Illumina [1]

Mature pab-miR11546a-3p

• Accession: MIMAT0057787
• Description: Picea abies pab-miR11546a-3p mature miRNA
• Sequence: 102 - UGUUAUUUCAACCCCUACCAG - 122
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918