Stem-loop pab-MIR11546b

Accession

MI0037037

Description

Picea abies pab-MIR11546b precursor miRNA

Sequence

12739 reads, 748.0 reads per million, 101 experiments

ggaaucUGGUAUGGGUUGAAGUAGCACCucucccuggcuuggcugcugcuucuaauaauggccaacugaggUGUUAUUUCAACCCCUACCAGacucc
(((.(((((((.((((((((((((((((((....(((((.(((....))).........)))))...)))))))))))))))))).))))))).)))

Structure

   a       U                  uccc     --------u   u 
gga ucUGGUA GGGUUGAAGUAGCACCuc    uggcu         ggc g
||| ||||||| ||||||||||||||||||    |||||         |||  
ccu aGACCAU CCCAACUUUAUUGUggag    accgg         ucg c
   c       C                  -uca     uaauaaucu   u 

Annotation confidence Medium

Genome context

MA_110460: 1852-1948 [+]

Mature pab-miR11546b-5p

• Accession: MIMAT0045135
• Description: Picea abies pab-miR11546b-5p mature miRNA
• Sequence: 7 - UGGUAUGGGUUGAAGUAGCACC - 28
• Evidence: experimental ; Illumina [1]

Mature pab-miR11546b-3p

• Accession: MIMAT0057788
• Description: Picea abies pab-miR11546b-3p mature miRNA
• Sequence: 72 - UGUUAUUUCAACCCCUACCAG - 92
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918