Stem-loop pab-MIR11546c

Accession

MI0037038

Description

Picea abies pab-MIR11546c precursor miRNA

Sequence

12637 reads, 741.0 reads per million, 101 experiments

uggaaucUGGUAUGGGUUGAAGUAGCACCucuccuugguuuuucugcuguuucuaauaguaggauccguuguaauggccaacugaggUGUUAUUUCAACCCCUACCAGacucca
((((.(((((((.((((((((((((((((((...((((...((((((((((...)))))))))).((((....))))))))..)))))))))))))))))).))))))).))))

Structure

    a       U                  ucc    ----------uuu          u 
ugga ucUGGUA GGGUUGAAGUAGCACCuc   uugg             uucugcuguu  
|||| ||||||| ||||||||||||||||||   ||||             |||||||||| c
accu aGACCAU CCCAACUUUAUUGUggag   aacc             aggaugauaa  
    c       C                  -uc    gguaauguugccu          u 

Annotation confidence Medium

Genome context

MA_138213: 6218-6331 [+]

Mature pab-miR11546c-5p

• Accession: MIMAT0045136
• Description: Picea abies pab-miR11546c-5p mature miRNA
• Sequence: 8 - UGGUAUGGGUUGAAGUAGCACC - 29
• Evidence: experimental ; Illumina [1]

Mature pab-miR11546c-3p

• Accession: MIMAT0057789
• Description: Picea abies pab-miR11546c-3p mature miRNA
• Sequence: 88 - UGUUAUUUCAACCCCUACCAG - 108
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918