Stem-loop pab-MIR11546d

Accession

MI0037039

Description

Picea abies pab-MIR11546d precursor miRNA

Sequence

12635 reads, 742.0 reads per million, 101 experiments

uggaaucUGGUAUGGGUUGAAGUAGCACCucuccuugguuuuucugcugcuucuaauaaaaagauccguuguaauggccaacugaggUGUUAUUUCAACCCCUACCAGacucca
((((.(((((((.((((((((((((((((((...((((((....(((.((.(((.......)))...)).)))..))))))..)))))))))))))))))).))))))).))))

Structure

    a       U                  ucc      uuuc   u  --u   aa 
ugga ucUGGUA GGGUUGAAGUAGCACCuc   uugguu    ugc gc   ucu  u
|||| ||||||| ||||||||||||||||||   ||||||    ||| ||   |||  a
accu aGACCAU CCCAACUUUAUUGUggag   aaccgg    aug ug   aga  a
    c       C                  -uc      --ua   u  ccu   aa 

Annotation confidence Medium

Genome context

MA_88146: 19507-19620 [+]

Mature pab-miR11546d-5p

• Accession: MIMAT0045137
• Description: Picea abies pab-miR11546d-5p mature miRNA
• Sequence: 8 - UGGUAUGGGUUGAAGUAGCACC - 29
• Evidence: experimental ; Illumina [1]

Mature pab-miR11546d-3p

• Accession: MIMAT0057790
• Description: Picea abies pab-miR11546d-3p mature miRNA
• Sequence: 88 - UGUUAUUUCAACCCCUACCAG - 108
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918