Stem-loop pab-MIR11546e

Accession

MI0037040

Description

Picea abies pab-MIR11546e precursor miRNA

Sequence

12651 reads, 744.0 reads per million, 101 experiments

caaccacuacaaucuggaaucUGGUAUGGGUUGAAGUAGCACCucucccuggcuaggcugcugcuucuucuuauaggauccguugcaauggccaacugaggugUUAUUUCAACCCCUACCGGGCUccaauaggguug
(((((.(((.....((((.(((((((.((((((((((((((((((....((((((.((.((.(.((((......)))).).)).))..))))))...)))))))))))))))))).))))))).)))).))))))))

Structure

     a   caauc    a       U                  uccc      -g  u  u c    uc 
caacc cua     ugga ucUGGUA GGGUUGAAGUAGCACCuc    uggcua  gc gc g uucu  u
||||| |||     |||| ||||||| ||||||||||||||||||    ||||||  || || | ||||   
guugg gau     accU GGGCCAU CCCAACUUUAUUguggag    accggu  cg ug c agga  u
     -   ----a    C       C                  -uca      aa  u  c u    ua 

Annotation confidence High

Genome context

MA_954650: 7963-8099 [-]

Mature pab-miR11546e-5p

• Accession: MIMAT0045138
• Description: Picea abies pab-miR11546e-5p mature miRNA
• Sequence: 22 - UGGUAUGGGUUGAAGUAGCACC - 43
• Evidence: experimental ; Illumina [1]

Mature pab-miR11546e-3p

• Accession: MIMAT0057791
• Description: Picea abies pab-miR11546e-3p mature miRNA
• Sequence: 104 - UUAUUUCAACCCCUACCGGGCU - 125
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918