Stem-loop pab-MIR11547

Accession

MI0037041

Description

Picea abies pab-MIR11547 precursor miRNA

Sequence

3840 reads, 146.0 reads per million, 78 experiments

ucaucugggaccuugcaUGUAGGGCCAGAAUGUCUUAUGcagccaaggaugacuugccggcagcauguucugugugagugaaaaugccuuuuuugguucaaugcacauauguggguguuggccaguuguccuuggcuacauuuaauaUUCCGGUUCUCAUGCUAGACcuccgauga
(((((.(((..((.(((((.((((((.((((((...(((.((((((((((((((.(((((((.(((((..((((((..(((....(((......)))))).)))))).)))))..))))))).)))))))))))))).)))...)))))).))))))))))).))..))).)))))

Structure

     u   ac  u     U      A      CUU   c              u       -g     uc      ag   aaau   uu 
ucauc ggg  cu gcaUG AGGGCC GAAUGU   AUG agccaaggaugacu gccggca  caugu  ugugug  uga    gcc  u
||||| |||  || ||||| |||||| ||||||   ||| |||||||||||||| |||||||  |||||  ||||||  |||    |||   
aguag cuc  GA CGUAC UCUUGG CUUaua   uac ucgguuccuguuga cgguugu  gugua  acacgu  acu    ugg  u
     c   CA  U     -      C      auu   a              c       gg     -u      -a   ----   uu 

Annotation confidence Medium

Genome context

MA_6169: 42443-42618 [+]

Mature pab-miR11547-5p

• Accession: MIMAT0045139
• Description: Picea abies pab-miR11547-5p mature miRNA
• Sequence: 18 - UGUAGGGCCAGAAUGUCUUAUG - 39
• Evidence: experimental ; Illumina [1]

Mature pab-miR11547-3p

• Accession: MIMAT0057792
• Description: Picea abies pab-miR11547-3p mature miRNA
• Sequence: 148 - UUCCGGUUCUCAUGCUAGAC - 167
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918