Stem-loop pab-MIR11550

Accession

MI0037044

Description

Picea abies pab-MIR11550 precursor miRNA

Sequence

62581 reads, 2040.0 reads per million, 102 experiments

guccagcaccguaauugaaaaUGAGUUCUUGAUUCGCUAUAGUaggagaugagauacauucuccgacUGUGGCGAACAAGUAACUCAUUuucaaguacgaugcucugau
(((.((((.((((.(((((((((((((((((.(((((((((((.(((((((.....)).))))).))))))))))))))).))))))))))))).)))).))))..)))

Structure

   -c    c    a             -    A           a     -  a 
guc  agca cgua uugaaaaUGAGUU CUUG UUCGCUAUAGU ggaga ug g
|||  |||| |||| ||||||||||||| |||| ||||||||||| ||||| || a
uag  ucgu gcau aacuuUUACUCAA GAAC AAGCGGUGUca ccucu ac u
   uc    a    g             U    -           g     u  a 

Annotation confidence High

Genome context

MA_175980: 5778-5886 [+]

Mature pab-miR11550-5p

• Accession: MIMAT0057793
• Description: Picea abies pab-miR11550-5p mature miRNA
• Sequence: 22 - UGAGUUCUUGAUUCGCUAUAGU - 43
• Evidence: experimental ; unknown

Mature pab-miR11550-3p

• Accession: MIMAT0045142
• Description: Picea abies pab-miR11550-3p mature miRNA
• Sequence: 68 - UGUGGCGAACAAGUAACUCAUU - 89
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918