Stem-loop pab-MIR11551a

Accession

MI0037045

Description

Picea abies pab-MIR11551a precursor miRNA

Sequence

22282 reads, 778.0 reads per million, 102 experiments

uuuuggguaaaggguuucggaauugauUGCGAGGCAAAACAAAAUGUGcucuggcugagaaauaaaauaaucaagauuucaguagcagcaUGUUUUGUUUUCCCUCCGCAAUuaauacucacaaauccugccgagga
((((.(((..(((((((.((.(((((((((((((.((((((((((((((((((.((((((................))))))))).))))))))))))))).))).)))))))))).))...)))))))))).))))

Structure

    g   aa       --c  a          -   C               -   g      aauaaaa 
uuuu ggu  aggguuu   gg auugauUGCG AGG AAAACAAAAUGUGcu cug cugaga       u
|||| |||  |||||||   || |||||||||| ||| ||||||||||||||| ||| ||||||        
agga ccg  uccuaaa   uc uaauUAACGC UCC UUUUGUUUUGUacga gau gacuuu       a
    g   --       cac  a          C   C               c   -      agaacua 

Annotation confidence High

Genome context

MA_490366: 3069-3205 [+]

Mature pab-miR11551a-5p

• Accession: MIMAT0057794
• Description: Picea abies pab-miR11551a-5p mature miRNA
• Sequence: 28 - UGCGAGGCAAAACAAAAUGUG - 48
• Evidence: experimental ; unknown

Mature pab-miR11551a-3p

• Accession: MIMAT0045143
• Description: Picea abies pab-miR11551a-3p mature miRNA
• Sequence: 91 - UGUUUUGUUUUCCCUCCGCAAU - 112
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918