Stem-loop pab-MIR11552

Accession

MI0037046

Description

Picea abies pab-MIR11552 precursor miRNA

Sequence

404 reads, 63.0 reads per million, 72 experiments

uuucggauccaucgcauagguuuuaUGUUUUUCGACGUUUUGGACCaaacuagugugguccaucaucaggaaagcgugugguuucaaaaaacgcuUUCCUGAUGAUGGACCACAcuaguuuaguccgaaacgucgaaaaacauaaaaccuaugcgauggaucugaaa
.((((((((((((((((((((((((((((((((((((((((((((.(((((((((((((((((((((((((((((((.............))))))))))))))))))))))))))))))).)))))))))))))))))))))))))))))))))))))))))))).

Structure

u                                            C                               guggu 
 uucggauccaucgcauagguuuuaUGUUUUUCGACGUUUUGGAC aaacuagugugguccaucaucaggaaagcgu     u
 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||     u
 aagucuagguagcguauccaaaauacaaaaagcugcaaagccug uuugaucACACCAGGUAGUAGUCCUUucgca     c
a                                            a                               aaaaa 

Annotation confidence Medium

Genome context

MA_17683: 18334-18500 [-]

Mature pab-miR11552-5p

• Accession: MIMAT0045144
• Description: Picea abies pab-miR11552-5p mature miRNA
• Sequence: 26 - UGUUUUUCGACGUUUUGGACC - 46
• Evidence: experimental ; Illumina [1]

Mature pab-miR11552-3p

• Accession: MIMAT0057795
• Description: Picea abies pab-miR11552-3p mature miRNA
• Sequence: 96 - UUCCUGAUGAUGGACCACA - 114
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918