Stem-loop pab-MIR11553

Accession

MI0037047

Description

Picea abies pab-MIR11553 precursor miRNA

Sequence

uucacaugcuuaccugaaaugaucaUUAAAAUAAGUUGGAUACUCCuaacacuaaacaauggcgugccuuggaauuuuggagggguuggagaaaauugugaaaaguguauugaaagagguaaaacaagaggucauuaccugcccaauugcauuggacgaagaaacugaggauucucaguguuagguguagccaacuuauuuuaaugggcauuuuaggaaagcauuugaa
.(((.((((((.(((((((((..((((((((((((((((.(((.((((((..............(.((((.((...)).)))).)..........((((....(((((((((....((((((.((.....))..))))))...))).))))))..))))....((((((....)))))))))))).))).))))))))))))))))..))))))))).)))))).))).

Structure

u   c      a         au                A   U      acuaaacaauggcgugccuuggaauuuuggagggguuggagaaaa    gaaa      -   aaag      -a  a 
 uca augcuu ccugaaaug  caUUAAAAUAAGUUGG UAC CCuaac                                             uugu    agugua uug    agguaa  ac a
 ||| |||||| |||||||||  |||||||||||||||| ||| ||||||                                             ||||    |||||| |||    ||||||  || g
 agu uacgaa ggauuuuac  guaauuuuauucaacc aug ggauug                                             agca    uuacgu aac    uccauu  ug a
a   u      a         gg                g   u      -------------------------ugacucuuaggagucaaaga    --gg      u   -ccg      ac  g 

Annotation confidence Not enough data

Genome context

MA_10431295: 2526-2754 [+]

Mature pab-miR11553

• Accession: MIMAT0045145
• Description: Picea abies pab-miR11553 mature miRNA
• Sequence: 26 - UUAAAAUAAGUUGGAUACUCC - 46
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918