Stem-loop pab-MIR11558

Accession

MI0037053

Description

Picea abies pab-MIR11558 precursor miRNA

Sequence

211 reads, 38.0 reads per million, 56 experiments

ugcuagccucaggggggagucccUAAGGUGAUUUGUAGCUGUCCUaagucugauuuucuguguuaauugacaaaaagcagcugcuguuauguuuuggacaguguuuuaaaacuauccaaaacaugggaaaaauauaguuuguuuacuugaagggauaucagacUUAGGACAACGACAAAUCACCuuagggaccccucugaggcuagca
(((((((((((((((((..(((((((((((((((((.(.(((((((((((((((.((((.........((((((............((((((((((((.(((........))).))))))))))))...........))))))........)))).))))))))))))))).).))))))))))))))))))))))))))))))))))

Structure

                 ag                 A C               u    guguuaauu      aagcagcugcug            c   guu 
ugcuagccucagggggg  ucccUAAGGUGAUUUGU G UGUCCUaagucugau uucu         gacaaa            uuauguuuugga agu   u
|||||||||||||||||  ||||||||||||||||| | ||||||||||||||| ||||         ||||||            |||||||||||| |||    
acgaucggagucucccc  agggauuCCACUAAACA C ACAGGAUUcagacua aggg         uuguuu            gguacaaaaccu uca   u
                 --                 G A               u    -aaguucau      -gauauaaaaag            a   aaa 

Annotation confidence Low

Genome context

MA_41864: 9696-9903 [-]

Mature pab-miR11558-5p

• Accession: MIMAT0057798
• Description: Picea abies pab-miR11558-5p mature miRNA
• Sequence: 24 - UAAGGUGAUUUGUAGCUGUCCU - 45
• Evidence: experimental ; unknown

Mature pab-miR11558-3p

• Accession: MIMAT0045151
• Description: Picea abies pab-miR11558-3p mature miRNA
• Sequence: 164 - UUAGGACAACGACAAAUCACC - 184
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918