Stem-loop pab-MIR11559

Accession

MI0037054

Description

Picea abies pab-MIR11559 precursor miRNA

Sequence

312 reads, 1174.0 reads per million, 9 experiments

auggcggccguagaagaugaugcagauaagaaauacaugauucugugcacgcugauugcCCUUGCCACUGCCGUUUAUUCgauaguuuaugaguucuuaccccaugggaaguaccagcuucaagcagucuacguugcggugcUUAUUAUUCUCUUGAUGGCCCcuau
..((.(((((((((.(((((((((((...............)))))(((((..((((((....((.((((.((......)).))))...((.((.(((.(((...)))))).)))))).....))))))..)).))).......)))))).)))..))))))))...

Structure

-au  c      --   a      gcagauaagaaauacaugauucugu   -  cu      -CCUU  -----------------------------C    C  UU 
   gg ggccgu  aga gaugau                         gca cg  gauugc     GC                              ACUG CG  U
   || ||||||  ||| ||||||                         ||| ||  ||||||     ||                              |||| ||   
   cC CCGGUA  UCU UUAUUA                         cgu gc  cugacg     cg                              ugau gC  A
uau  -      GU   C      ------------------UUcgugg   u  au      aacuu  accaugaaggguaccccauucuugaguauu    a  UU 

Annotation confidence Low

Genome context

MA_256013: 2742-2908 [-]

Mature pab-miR11559-5p

• Accession: MIMAT0057799
• Description: Picea abies pab-miR11559-5p mature miRNA
• Sequence: 60 - CCUUGCCACUGCCGUUUAUUC - 80
• Evidence: experimental ; unknown

Mature pab-miR11559-3p

• Accession: MIMAT0045152
• Description: Picea abies pab-miR11559-3p mature miRNA
• Sequence: 143 - UUAUUAUUCUCUUGAUGGCCC - 163
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918