Stem-loop pab-MIR11466e

Accession

MI0037055

Description

Picea abies pab-MIR11466e precursor miRNA

Sequence

22988 reads, 747.0 reads per million, 101 experiments

gaccauguaauuacucucuacUUCCACCAGACACUUGUUCUCuugaaaaugcaauaugaaucuagaGAACAGGUGUCUUAUGGAUGUugaaaguaaagagcauguuc
((.(((((..(((((.((.((.((((..(((((((((((((((.((..............)).)))))))))))))))..)))).)).)).)))))...))))).))

Structure

  c     -aa     c  u  U    CC               u  aaaugc 
ga caugu   uuacu uc ac UCCA  AGACACUUGUUCUCu ga      a
|| |||||   ||||| || || ||||  ||||||||||||||| ||       
cu guacg   aauga ag UG AGGU  UCUGUGGACAAGaga cu      a
  u     aga     a  u  U    AU               u  aaguau 

Annotation confidence Medium

Genome context

MA_113321: 1958-2064 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pab-MIR11466e

Mature pab-miR11466e-5p

• Accession: MIMAT0045153
• Description: Picea abies pab-miR11466e-5p mature miRNA
• Sequence: 22 - UUCCACCAGACACUUGUUCUC - 42
• Evidence: experimental ; Illumina [1]

Mature pab-miR11466e-3p

• Accession: MIMAT0057800
• Description: Picea abies pab-miR11466e-3p mature miRNA
• Sequence: 67 - GAACAGGUGUCUUAUGGAUGU - 87
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918