Stem-loop pab-MIR11560

Accession

MI0037056

Description

Picea abies pab-MIR11560 precursor miRNA

Sequence

10865 reads, 580.0 reads per million, 102 experiments

gcAGCCUGUUCAGGUAAUGUAACGCCcuguuuugaucuacggauggcuuuuggugaaaaauuaaagaggcuguucaaauguccagcugucauuguuggaugaauggaggccgUUCCAUUGCUUGCACACGCUGc
(((((.(((.(((((((((.((((.(((.(.((.(((((..(((((((((((((.....))))))).(((((..(....)..)))))))))))..))))).)).).))).)))).))))))))).))).)))))

Structure

     C   U         U    C   g u  g     cg      ---------------------       g 
gcAGC UGU CAGGUAAUG AACG Ccu u uu aucua  gauggc                     uuuuggu a
||||| ||| ||||||||| |||| ||| | || |||||  ||||||                     ||||||| a
cGUCG ACA GUUCGUUAC UUgc gga g aa uaggu  uuacug                     gaaauua a
     C   C         C    c   g u  g     ug      ucgaccuguaaacuugucgga       a 

Annotation confidence High

Genome context

MA_103984: 1165-1298 [-]

Mature pab-miR11560-5p

• Accession: MIMAT0057801
• Description: Picea abies pab-miR11560-5p mature miRNA
• Sequence: 3 - AGCCUGUUCAGGUAAUGUAACGCC - 26
• Evidence: experimental ; unknown

Mature pab-miR11560-3p

• Accession: MIMAT0045154
• Description: Picea abies pab-miR11560-3p mature miRNA
• Sequence: 113 - UUCCAUUGCUUGCACACGCUG - 133
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918