Stem-loop pab-MIR11561

Accession

MI0037057

Description

Picea abies pab-MIR11561 precursor miRNA

Sequence

54112 reads, 2030.0 reads per million, 102 experiments

cagguuguuUUAGAUUAGUGUACACAGGAAuuuugugcgaguguugguacacaaaaUUCCUUUGUAGACUAAUCCAAagcuaccug
(((((.(((((.(((((((.((((.((((((((((((............)))))))))))).)))).))))))).))))).)))))

Structure

     u     A       G    C            cgagu 
caggu guuUU GAUUAGU UACA AGGAAuuuugug     g
||||| ||||| ||||||| |||| ||||||||||||      
gucca cgaAA CUAAUCA AUGU UCCUUaaaacac     u
     u     C       G    U            auggu 

Annotation confidence High

Genome context

MA_10434940: 21273-21358 [-]

Mature pab-miR11561-5p

• Accession: MIMAT0057802
• Description: Picea abies pab-miR11561-5p mature miRNA
• Sequence: 10 - UUAGAUUAGUGUACACAGGAA - 30
• Evidence: experimental ; unknown

Mature pab-miR11561-3p

• Accession: MIMAT0045155
• Description: Picea abies pab-miR11561-3p mature miRNA
• Sequence: 57 - UUCCUUUGUAGACUAAUCCAA - 77
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918