Stem-loop pab-MIR11562a

Accession

MI0037058

Description

Picea abies pab-MIR11562a precursor miRNA

Sequence

25566 reads, 921.0 reads per million, 100 experiments

gugccaugccagcaaUUCUGAUAAUGCUUCACCCUCAaugcccaauuuuaauuacaucaauuucacugcugcgcagauugggcagUGAGGGUGAAUCAUUACAGAAuuaguggcaguguac
((((..(((((..(((((((.(((((.((((((((((.((((((((...................((((...)))))))))))).)))))))))).))))))))))))..)))))..))))

Structure

    ca     gc       A     C          a        uuuaauuacaucaauuuca    u 
gugc  ugcca  aaUUCUG UAAUG UUCACCCUCA ugcccaau                   cugc  
||||  |||||  ||||||| ||||| |||||||||| ||||||||                   |||| g
caug  acggu  uuAAGAC AUUAC AAGUGGGAGU acggguua                   gacg  
    ug     ga       -     U          g        -------------------    c 

Annotation confidence Medium

Genome context

MA_2282: 41869-41989 [+]

Mature pab-miR11562a-5p

• Accession: MIMAT0045156
• Description: Picea abies pab-miR11562a-5p mature miRNA
• Sequence: 16 - UUCUGAUAAUGCUUCACCCUCA - 37
• Evidence: experimental ; Illumina [1]

Mature pab-miR11562a-3p

• Accession: MIMAT0057803
• Description: Picea abies pab-miR11562a-3p mature miRNA
• Sequence: 86 - UGAGGGUGAAUCAUUACAGAA - 106
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918