Stem-loop pab-MIR11562c

Accession

MI0037060

Description

Picea abies pab-MIR11562c precursor miRNA

Sequence

25501 reads, 928.0 reads per million, 100 experiments

gccaugccagcaaUUCUGAUAAUGCUUCACCCUCAaugcccaauuuuaauuacaccaauuucacuucugcacagauugggcaGUGAGGGUGAAGCAUUACAGAauuaguggcagcgc
((..(((((..(((((((.((((((((((((((((.((((((((((..........................)))))))))).)))))))))))))))))))))))..)))))))..

Structure

--  ca     gc       A                a          uaauuacaccaa 
  gc  ugcca  aaUUCUG UAAUGCUUCACCCUCA ugcccaauuu            u
  ||  |||||  ||||||| |||||||||||||||| ||||||||||             
  cg  acggu  uuaAGAC AUUACGAAGUGGGAGU acggguuaga            u
cg  --     ga       -                G          cacgucuucacu 

Annotation confidence Low

Genome context

MA_8080030: 1929-2045 [+]

Mature pab-miR11562c-5p

• Accession: MIMAT0045158
• Description: Picea abies pab-miR11562c-5p mature miRNA
• Sequence: 14 - UUCUGAUAAUGCUUCACCCUCA - 35
• Evidence: experimental ; Illumina [1]

Mature pab-miR11562c-3p

• Accession: MIMAT0057805
• Description: Picea abies pab-miR11562c-3p mature miRNA
• Sequence: 83 - GUGAGGGUGAAGCAUUACAGA - 103
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918