Stem-loop pab-MIR11546f

Accession

MI0037066

Description

Picea abies pab-MIR11546f precursor miRNA

Sequence

1314 reads, 201.0 reads per million, 83 experiments

ggugggaucuggcacgggUUGAAGGAACACCUCUGCUUGAcuugguggcugcugcuccauauauacgggccugguugcaagagucagcuggggUGUUAUUUCAACCCCUACCggauuccauu
.(((((((((((...(((((((((.((((((((.(((.(((((.(((((((..((.((........)))).)))))))..)))))))).)))))))).)))))))))...))))))))))).

Structure

g           cac         G        U   U     -g       cu  u  aua 
 gugggaucugg   gggUUGAAG AACACCUC GCU GAcuu  guggcug  gc cc   u
 |||||||||||   ||||||||| |||||||| ||| |||||  |||||||  || ||    
 uaccuuaggCC   CCCAACUUU UUGUgggg cga cugag  cguuggu  cg gg   a
u           AUC         A        u   -     aa       -c  -  cau 

Annotation confidence Medium

Genome context

MA_2634: 22397-22518 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from pab-MIR11546f

Mature pab-miR11546f-5p

• Accession: MIMAT0045164
• Description: Picea abies pab-miR11546f-5p mature miRNA
• Sequence: 19 - UUGAAGGAACACCUCUGCUUGA - 40
• Evidence: experimental ; Illumina [1]

Mature pab-miR11546f-3p

• Accession: MIMAT0057810
• Description: Picea abies pab-miR11546f-3p mature miRNA
• Sequence: 94 - UGUUAUUUCAACCCCUACC - 112
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918