Stem-loop pab-MIR11564a

Accession

MI0037067

Description

Picea abies pab-MIR11564a precursor miRNA

Sequence

40184 reads, 1367.0 reads per million, 102 experiments

aucagucaauggaaguccacagauUUGACCACAAAAUCCACAUUGucuucuggguuuuguuuucagaggaaaaaaugagucuuaAUGUGGAUGUUGGGGUCAAAUcuaugggguuuccaucgauugau
(((((((.((((((.((((.((((((((((.(((.(((((((((((((((((((.......)))))))))............)))))))))).))).)))))))))).))))..)))))).)))))))

Structure

       a      -g    c          A   A          ------------         uu 
aucaguc auggaa  ucca agauUUGACC CAA AUCCACAUUG            ucuucuggg  u
||||||| ||||||  |||| |||||||||| ||| ||||||||||            |||||||||  u
uaguuag uaccuu  gggu ucUAAACUGG GUU UAGGUGUAau            aggagacuu  g
       c      ug    a          G   G          ucugaguaaaaa         uu 

Annotation confidence High

Genome context

MA_114913: 16283-16410 [-]

Mature pab-miR11564a-5p

• Accession: MIMAT0045165
• Description: Picea abies pab-miR11564a-5p mature miRNA
• Sequence: 25 - UUGACCACAAAAUCCACAUUG - 45
• Evidence: experimental ; Illumina [1]

Mature pab-miR11564a-3p

• Accession: MIMAT0057811
• Description: Picea abies pab-miR11564a-3p mature miRNA
• Sequence: 85 - AUGUGGAUGUUGGGGUCAAAU - 105
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918