Stem-loop pab-MIR11409f

Accession

MI0037070

Description

Picea abies pab-MIR11409f precursor miRNA

Sequence

415 reads, 36.0 reads per million, 72 experiments

aaucagcauauauccauuUUAACUCUGGAUCUAUCAAAAgucgagaggcaucaaaucccuugagaugcaaaccuuaccgcaaguuuugcacacuaaaaaagauuugcaccucaggagauuuaaucccucuuggugaUUGAUAGAUCCAUAGGUAAGUuggaucuauucugguu
((((((.(((.(((((.((((.((.((((((((((((..(((((((((.((.(((((.((((((.((((((.(((...((((...)))).........))).)))))).)))))).))))).)).)))))))))..)))))))))))).)).)))).))))).))).))))))

Structure

      c   u     u    A  C            AA         c  c     c      a      c   ------acc    g 
aaucag aua aucca uUUA CU UGGAUCUAUCAA  gucgagagg au aaauc cuugag ugcaaa cuu         gcaa  
|||||| ||| ||||| |||| || ||||||||||||  ||||||||| || ||||| |||||| |||||| |||         |||| u
uugguc uau uaggu GAAU GA ACCUAGAUAGUU  ugguucucc ua uuuag ggacuc acguuu gaa         cguu  
      u   c     U    G  U            ag         c  a     a      c      a   aaaaucaca    u 

Annotation confidence High

Genome context

MA_10252024: 7479-7651 [+]

Mature pab-miR11409f-5p

• Accession: MIMAT0057814
• Description: Picea abies pab-miR11409f-5p mature miRNA
• Sequence: 19 - UUAACUCUGGAUCUAUCAAAA - 39
• Evidence: experimental ; unknown

Mature pab-miR11409f-3p

• Accession: MIMAT0045168
• Description: Picea abies pab-miR11409f-3p mature miRNA
• Sequence: 137 - UUGAUAGAUCCAUAGGUAAGU - 157
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918