Stem-loop pab-MIR11409g

Accession

MI0037072

Description

Picea abies pab-MIR11409g precursor miRNA

Sequence

587 reads, 45.0 reads per million, 74 experiments

gguucuaucaaguacCGAGAGGGAUCAAAUUUCauaagguguaauuuuuuuaucauuuaacuccaugucaucuacuaaauccuucauauuaaaugauaaaaaaaaUUGCACCUUAGGAAAUUUGAUCccucucggugccugauagcucc
((..((((((.((((((((((((((((((((((.((((((((((((((((((((((((((............................))))))))).))))))))))))))))).)))))))))))))))))))))).))))))..))

Structure

  uu      a                      a                 -         cuccaugucaucu 
gg  cuauca guacCGAGAGGGAUCAAAUUUC uaagguguaauuuuuuu aucauuuaa             a
||  |||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||              
cc  gauagu cguggcucuccCUAGUUUAAAG AUUCCACGUUaaaaaaa uaguaaauu             c
  uc      c                      G                 a         auacuuccuaaau 

Annotation confidence Low

Genome context

MA_14836: 22493-22641 [+]

Mature pab-miR11409g-5p

• Accession: MIMAT0057816
• Description: Picea abies pab-miR11409g-5p mature miRNA
• Sequence: 16 - CGAGAGGGAUCAAAUUUC - 33
• Evidence: experimental ; unknown

Mature pab-miR11409g-3p

• Accession: MIMAT0045170
• Description: Picea abies pab-miR11409g-3p mature miRNA
• Sequence: 106 - UUGCACCUUAGGAAAUUUGAUC - 127
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918