Stem-loop pab-MIR11571

Accession

MI0037079

Description

Picea abies pab-MIR11571 precursor miRNA

Sequence

uaaucauugUUGGAUUUCAGUUCCCUCAUCgacaaugcuccuucugauuccauggaguuuagaguguggccaugucuuuuaucaugacuggaggaucauguaggggaggaguauaaaggaaccccucugaguguaaagguuaccacaguuuaguuucauaagggcacaacuacaccccaaucgacuauggauucuguaaagaucaacaacgcugaugagggaucugaacaccaacagagguug
(((((.(((((((..(((((.((((((((((.(..((.....(((((.(((((((.(.((.(.((((((...(((((((......(((((..((..(((.((((((.((............)))))))).))).........)).))))).........)))))))...)))))).).)).)..))))))).)).....)))....))..).)))))))))).)))))..))))))).)))))

Structure

     a       AU     U          a aa  cuccu   -----  u       -a u  a a      cca       ---uaucau     ga  -------au   g      a  aguau 
uaauc uugUUGG  UUCAG UCCCUCAUCg c  ug     ucu     ga uccaugg  g uu g gugugg   ugucuuu         gacug  gg         cau uagggg gg     a
||||| |||||||  ||||| |||||||||| |  ||     |||     || |||||||  | || | ||||||   |||||||         |||||  ||         ||| |||||| ||      
guugg gacaacc  aaguc agggaguagu g  ac     aga     cu agguauc  c aa c cacauc   acgggaa         uugac  cc         gug gucucc cc     a
     a       ac     u          c ca  -aacu   aaugu  u       ag u  c c      aac       uacuuugau     -a  auuggaaau   a      -  aagga 

Annotation confidence Not enough data

Genome context

MA_199537: 4990-5232 [-]

Mature pab-miR11571

• Accession: MIMAT0045177
• Description: Picea abies pab-miR11571 mature miRNA
• Sequence: 10 - UUGGAUUUCAGUUCCCUCAUC - 30
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918