Stem-loop pab-MIR11572

Accession

MI0037080

Description

Picea abies pab-MIR11572 precursor miRNA

Sequence

928 reads, 69.0 reads per million, 28 experiments

cuuguuggguucagcggCGAUGGUGCUACAAGUCGAGUuuuaucagauaacuugcaugcauuugaaaccgaguuaaagauauaaacUUGGCUUGUCGCACCAUAGCCuaggaaucaucaag
((((...(((((...(((.(((((((.(((((((((((((((((...(((((((....(....)....)))))))..)))).))))))))))))).))))))).)))...)))))..))))

Structure

    uug     agc   G       U             -    aga       caug a 
cuug   gguuc   ggC AUGGUGC ACAAGUCGAGUuu uauc   uaacuug    c u
||||   |||||   ||| ||||||| ||||||||||||| ||||   |||||||    |  
gaac   cuaag   CCG UACCACG UGUUCGGUUcaaa auag   auugagc    g u
    -ua     gau   A       C             u    -aa       caaa u 

Annotation confidence High

Genome context

MA_211288: 9703-9823 [+]

Mature pab-miR11572-5p

• Accession: MIMAT0057822
• Description: Picea abies pab-miR11572-5p mature miRNA
• Sequence: 18 - CGAUGGUGCUACAAGUCGAGU - 38
• Evidence: experimental ; unknown

Mature pab-miR11572-3p

• Accession: MIMAT0045178
• Description: Picea abies pab-miR11572-3p mature miRNA
• Sequence: 87 - UUGGCUUGUCGCACCAUAGCC - 107
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918