miRBase entry: pab-MIR11573b

Stem-loop pab-MIR11573b


Accession
MI0037082
Description
Picea abies pab-MIR11573b precursor miRNA


Sequence

521 reads, 44.0 reads per million, 81 experiments
ccgguucuugggccuuaggccgaaaUUGGGGAGCGUAUUGUAGAUUcaaaacugguggauuccagggagugcaguuUUGAAUCUAUAAUACUCUCCACCaguuucagccgaaggcccaagagcugg
((((((((((((((((.(((.((((((((((((.(((((((((((((((((((...(.((((....)))).)))))))))))))))))))).)))).)))))))).))).))))))))))))))))

Structure
                a   c        -    C                   ggu g    c 
ccgguucuugggccuu ggc gaaaUUGG GGAG GUAUUGUAGAUUcaaaacu   g auuc a
|||||||||||||||| ||| |||||||| |||| |||||||||||||||||||   | ||||  
ggucgagaacccggaa ccg cuuugaCC CCUC CAUAAUAUCUAAGUUuuga   c ugag g
                g   a        A    U                   --- g    g 


Annotation confidence Low
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Genome context
MA_10431514: 247-372 [+]

Database links

Mature pab-miR11573b-5p

Accession MIMAT0045180
Description Picea abies pab-miR11573b-5p mature miRNA
Sequence 26 - UUGGGGAGCGUAUUGUAGAUU - 46
Evidence experimental
Illumina [1]

Mature pab-miR11573b-3p

Accession MIMAT0057824
Description Picea abies pab-miR11573b-3p mature miRNA
Sequence 77 - UUGAAUCUAUAAUACUCUCCACC - 99
Evidence experimental
unknown

References

  1. PubMed ID: 26318183
    Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
    "Xia R, Xu J, Arikit S, Meyers BC"
    "Mol Biol Evol (2015) 32:2905-2918