Stem-loop pab-MIR11575

Accession

MI0037089

Description

Picea abies pab-MIR11575 precursor miRNA

Sequence

ggagugaguuaaaaaguggacaaacucaaccuuucuggugacuauuuuuuuuagcgaggcaaaguuccaugcucauccacucauuuuuuuggaauuccgaccaucugggucuuuauaaaauggacuaaaaccccuaguggcaaaguuccauggucaaaauucccgucaaucagguggaaaaaugguugaguUUGUCAACUUUUUAACUUACUcu
(((((((((((((((((.(((((((((((((..((....))...........((((.((.......)).))))..((((((.........((((((..(((((..((((.((((.((....((........))....))..)))).)))))))))..)))))).........)))))).....))))))))))))).)))))))))))))))))

Structure

                 g             uuucuggugacuauuuuuuuuagcgaggcaaaguuccaugcuca      cauuuuuuu      cc     uc    u    -a  aaau  acu 
ggagugaguuaaaaagu gacaaacucaacc                                            uccacu         ggaauu  gacca  uggg cuuu  ua    gg   a
||||||||||||||||| |||||||||||||                                            ||||||         ||||||  |||||  |||| ||||  ||    ||    
ucUCAUUCAAUUUUUCA CUGUUugaguugg                                            aggugg         ccuuaa  cuggu  accu gaaa  gu    cc   a
                 A             ---------------------------------------uaaaa      acuaacugc      aa     --    u    cg  gauc  caa 

Annotation confidence Not enough data

Genome context

MA_253528: 3092-3305 [+]

Mature pab-miR11575

• Accession: MIMAT0045187
• Description: Picea abies pab-miR11575 mature miRNA
• Sequence: 192 - UUGUCAACUUUUUAACUUACU - 212
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918