Stem-loop pab-MIR11577

Accession

MI0037091

Description

Picea abies pab-MIR11577 precursor miRNA

Sequence

aguaggagcgcuucccugucaauauuauggccgggaucauaaacaacugucauauaucucuuaacguacacuaugucgaguucuguucaauuuuuucauuuucucagucccuuaucgauggauaauuugcauagugggaaaauuaauugaaaagaacugcacacaguguaagcgaaagguuugcgcugagugagugagagacagauaugaggUUGUUUGAGAUCCCUGGGCAUGauauauacagggaugagcucguacu
((((.((((.(.(((((((..((((((((.((((((((.(((((((((.((((((.(((((((.(.(((....(((..((((((.(((((((.....(((((((((((...(((((....)))))...))....))))))))).))))))).))))))..)))((((((((((.....)))))))))).))).))))))))...))))))))))))))).)))))).)).))))))))..))))))).).)))).))))

Structure

    g    g u       ca        g  -      a         g      --a       a g   ----------------------acua   cg      g       uuuuc         ----  ccc     g 
agua gagc c ucccugu  auauuaug cc gggauc uaaacaacu ucauau   ucucuua c uac                          ugu  aguucu uucaauu     auuuucuca    gu   uuauc a
|||| |||| | |||||||  |||||||| || |||||| ||||||||| ||||||   ||||||| | |||                          |||  |||||| |||||||     |||||||||    ||   |||||  
ucau cucg g agggaca  uauaGUAC GG CCCUAG GUUUGUUgg aguaua   agagagu g gug                          aca  ucaaga aaguuaa     uaaaagggu    cg   aauag u
    g    a u       ua        G  U      A         -      gac       - a   agucgcguuuggaaagcgaaugugac   cg      a       ----u         gaua  uuu     g 

Annotation confidence Not enough data

Genome context

MA_10426486: 43979-44237 [-]

Mature pab-miR11577

• Accession: MIMAT0045189
• Description: Picea abies pab-miR11577 mature miRNA
• Sequence: 213 - UUGUUUGAGAUCCCUGGGCAUG - 234
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918