Stem-loop pab-MIR11578

Accession

MI0037092

Description

Picea abies pab-MIR11578 precursor miRNA

Sequence

3845 reads, 147.0 reads per million, 95 experiments

ugccaaacgaaaaaccaaucCUGUCAGUGGACAAAAGCGACcuaaaccggacaauaaaauacuguaaggUUUAGGUUGCUUCUGUCCACUggcgggguuguuuuucacuuuggca
(((((((.(((((((.(((((((((((((((((.((((((((((((((..(((.........)))..)))))))))))))).))))))))))))))))))))))))..)))))))

Structure

       -c       c                 A              gg   aua 
ugccaaa  gaaaaac aaucCUGUCAGUGGACA AAGCGACcuaaacc  aca   a
|||||||  ||||||| ||||||||||||||||| ||||||||||||||  |||   a
acgguuu  cuuuuug uuggggcggUCACCUGU UUCGUUGGAUUUgg  ugu   a
       ca       -                 C              aa   cau 

Annotation confidence Low

Genome context

MA_118220: 5476-5590 [+]

Mature pab-miR11578-5p

• Accession: MIMAT0057827
• Description: Picea abies pab-miR11578-5p mature miRNA
• Sequence: 21 - CUGUCAGUGGACAAAAGCGAC - 41
• Evidence: experimental ; unknown

Mature pab-miR11578-3p

• Accession: MIMAT0045190
• Description: Picea abies pab-miR11578-3p mature miRNA
• Sequence: 70 - UUUAGGUUGCUUCUGUCCACU - 90
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918