Stem-loop pab-MIR11582

Accession

MI0037096

Description

Picea abies pab-MIR11582 precursor miRNA

Sequence

6349 reads, 317.0 reads per million, 27 experiments

cggcgauauggauuucaaguaUUUGUCCAACGUAAACGGCAacggauucuguauauauagaaaaauauauacaauuuguauacaucuacaucuauuucuauuguacauaaugcaugcagaggaagaguugCCGUUUGCGUUGGACAAAAUAUCugagacccgaauaucaaacg
....(((((((.(((((.(((((((((((((((((((((((((...((((((((((((......))))))))..(((((((.(((.((((...........))))....))).)))))))))))..))))))))))))))))))).)))))).))))).))..))))).....

Structure

-cggc     --  a     a      -                   gga    guauauauagaaaaauauauacaa       a   ---c    ucua 
     gauau  gg uuuca guaUUU GUCCAACGUAAACGGCAac   uucu                        uuuguau cau    uaca    u
     |||||  || ||||| |||||| |||||||||||||||||||   ||||                        ||||||| |||    ||||    u
     cuaua  cc agagu UAUAAA CAGGUUGCGUUUGCCguug   aagg                        agacgua gua    augu    u
gcaaa     ag  c     C      A                   -ag    ------------------------       c   auac    uauc 

Annotation confidence High

Genome context

MA_497334: 4124-4296 [+]

Mature pab-miR11582-5p

• Accession: MIMAT0045194
• Description: Picea abies pab-miR11582-5p mature miRNA
• Sequence: 22 - UUUGUCCAACGUAAACGGCA - 41
• Evidence: experimental ; Illumina [1]

Mature pab-miR11582-3p

• Accession: MIMAT0057829
• Description: Picea abies pab-miR11582-3p mature miRNA
• Sequence: 131 - CCGUUUGCGUUGGACAAAAUAUC - 153
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918