Stem-loop pab-MIR482j

Accession

MI0037143

Description

Picea abies pab-MIR482j precursor miRNA

Literature search

1 open access papers mention pab-MIR482j
(5 sentences)

Sequence

8973 reads, 734.0 reads per million, 94 experiments

ggUCUUUAGGCUUUGGAGGAUUUggaaaggcauagucauuauuguuaccgaggaucaucgauuuucucugauccUUUCCAACGCCUCCCAUGCCUAuagucc
((.((.(((((...(((((..(((((((((.............((((..(((((((...)))))))..)))))))))))))..)))))...))))).)).))

Structure

  U  U     UUU     AU         cauagucauuauu    cc       a 
gg CU UAGGC   GGAGG  UUggaaagg             guua  gaggauc  
|| || |||||   |||||  |||||||||             ||||  ||||||| u
cc ga AUCCG   CCUCC  AACCUUUcc             uagu  cuuuuag  
  u  u     UAC     GC         -------------    cu       c 

Annotation confidence Medium

Genome context

MA_12427: 26151-26252 [-]

Mature pab-miR482j-5p

• Accession: MIMAT0057832
• Description: Picea abies pab-miR482j-5p mature miRNA
• Sequence: 3 - UCUUUAGGCUUUGGAGGAUUU - 23
• Evidence: experimental ; unknown

Mature pab-miR482j-3p

• Accession: MIMAT0045245
• Description: Picea abies pab-miR482j-3p mature miRNA
• Sequence: 75 - UUUCCAACGCCUCCCAUGCCUA - 96
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918