Stem-loop pab-MIR156z

Accession

MI0037147

Description

Picea abies pab-MIR156z precursor miRNA

Literature search

2 open access papers mention pab-MIR156z
(7 sentences)

Sequence

760 reads, 60.0 reads per million, 55 experiments

agcagaagaaggcguugauguugcUGACAGAAGAUAGAGAGCACaugcacucacaugcagagagacugcuuuugaguuguauguGCUCUCUAUGCUUCUGUCCGCauugguuuuugugaunuuuucuguu
.((((((((..(((..(((..(((.((((((((((((((((((((((((((((...((((.....))))...)))).)))))))))))))))).)))))))).)))...)))..)))....)))))))).

Structure

a        --ag   uu   -gu   U        -                -    cau    a 
 gcagaaga    gcg  gau   ugc GACAGAAG AUAGAGAGCACaugca cuca   gcag g
 ||||||||    |||  |||   ||| |||||||| |||||||||||||||| ||||   |||| a
 ugucuuuu    ugu  uug   aCG CUGUCUUC UAUCUCUCGuguaugu gagu   cguc g
u        nuag   uu   guu   C        G                u    uuu    a 

Annotation confidence High

Genome context

Unknown

Mature pab-miR156z-5p

• Accession: MIMAT0045249
• Description: Picea abies pab-miR156z-5p mature miRNA
• Sequence: 25 - UGACAGAAGAUAGAGAGCAC - 44
• Evidence: experimental ; Illumina [1]

Mature pab-miR156z-3p

• Accession: MIMAT0057833
• Description: Picea abies pab-miR156z-3p mature miRNA
• Sequence: 85 - GCUCUCUAUGCUUCUGUCCGC - 105
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918