Stem-loop pab-MIR482q

Accession

MI0037156

Description

Picea abies pab-MIR482q precursor miRNA

Literature search

1 open access papers mention pab-MIR482q
(5 sentences)

Sequence

guuacagacggaagcucuacaaguucgcgugauuaguguguauggaguggccacgcuggaaaaauauuguugcucaaaaugagcuacaaucucuagaaaguuauugauguuucugaugugggucacagucucuugagauuguugagaggaaaaaucaauuuagauauggaugaaaauuucauauuauauuuaaaucgauuuuugaauaacaauuuugagaaacuguaagccaaaucacaauaucacaagucacugacuuuguagguguuguagauuguuuugagcaacgaugUCUUUCCAACGCCGGCCAUUCCauauacaccaaucaccccaacuuguagaguuucagcgaac
..........(((((((((((((((.(.((((((.(((((((((((((((((.((.((((((.(((((((((((((((((((.(((((((.((((.(((((((.(((((((..((((.(((.(.(((((.((((((((((((((.....(((((((.(((((((((((((((((...))))).)))))))))))).)))))))...)))))))))))))).))))).).))).)))).)))))))........))))))).)))).))))))).))))))))))))))))))).)))))).))..))))))))))))))))).)))))).).))))))))))))))).......

Structure

guuacagacg               c c      a                 -a  c      a                   g       c    g       -------u       uc    g   g c     c              agagg       a            -     a 
          gaagcucuacaaguu g gugauu guguguauggaguggcc  cg uggaaa auauuguugcucaaaauga cuacaau ucua aaaguua        ugauguu  ugau ugg u acagu ucuugagauuguug     aaaaauc auuuagauaugg augaa  
          ||||||||||||||| | |||||| |||||||||||||||||  || |||||| ||||||||||||||||||| ||||||| |||| |||||||        |||||||  |||| ||| | ||||| ||||||||||||||     ||||||| |||||||||||| ||||| a
          cuuugagauguucaa c cacuaa cacauauaCCUUACCGG  GC ACCUUU Uguagcaacgaguuuuguu gauguug ggau uuucagu        acuauaa  acua acc a uguca agaguuuuaacaau     uuuuuag uaaauuuauauu uacuu  
---caagcga               c c      c                 CC  A      C                   a       u    g       cacugaac       -c    a   g a     a              --aag       c            a     u 

Annotation confidence Not enough data

Genome context

MA_10425802: 613-966 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pab-MIR482q

Mature pab-miR482q

• Accession: MIMAT0045258
• Description: Picea abies pab-miR482q mature miRNA
• Sequence: 293 - UCUUUCCAACGCCGGCCAUUCC - 314
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918