Stem-loop cas-MIR159c

Accession

MI0037161

Description

Camelina sativa cas-MIR159c precursor miRNA

Literature search

1 open access papers mention cas-MIR159c
(1 sentences)

Sequence

ggaAGAAGAAGAGGAAGAGCUCCUugaaguucaauggaggguuuagcaggguaaaguaaagcugcuaagcuauggaucccauaagccuuaucaaauucaaaaucauugaugauaagguuuuuuuauggauuccauauuucaggagcuuucacuuacccuuuuaauggcuucauucuucUUUGGAUUGAAGGGAGCUCUUcaucucucucuccc
((((((.((.((.((((((((((((..(((((((.(((((((..((((((((((.((((((((.((.((.((((((..(((((((((((((((...((((.....)))))))))))))....))))))..)))))).)).)).)))))).))))))))).......)))..))))))).)))))))..)))))))))))).))))))).))).

Structure

-   -   A  A  G            ga       u       uu   -------       a  -      g  a  c      uc      ----         aau    a 
 gga AGA GA GA GAAGAGCUCCUu  aguucaa ggagggu  agc       aggguaa gu aaagcu cu ag uaugga  ccauaa    gccuuauca   ucaa a
 ||| ||| || || ||||||||||||  ||||||| |||||||  |||       ||||||| || |||||| || || ||||||  ||||||    |||||||||   |||| u
 ccu ucu cu cu cUUCUCGAGGGA  UUAGGUU cuucuua  ucg       ucccauu ca uuucga ga uu auaccu  gguauu    uggaauagu   aguu c
c   c   -  -  a            AG       U       cu   guaauuu       -  c      g  c  u      ua      uuuu         ---    a 

Annotation confidence Not enough data

Genome context

chr3: 8167509-8167721 [+]

Mature cas-miR159c-5

• Accession: MIMAT0045263
• Description: Camelina sativa cas-miR159c-5 mature miRNA
• Sequence: 4 - AGAAGAAGAGGAAGAGCUCCU - 24
• Evidence: experimental ; Illumina [1]

Mature cas-miR159c-3p

• Accession: MIMAT0045264
• Description: Camelina sativa cas-miR159c-3p mature miRNA
• Sequence: 179 - UUUGGAUUGAAGGGAGCUCUU - 199
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25826400
   Identification of microRNAs and transcript targets in Camelina sativa by deep sequencing and computational methods
   Poudel S, Aryal N, Lu C
   PLoS One (2015) 10:e0121542