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Identification of microRNAs and transcript targets in Camelina sativa by deep sequencing and computational methods |
|
|---|---|
| PubMed ID | 25826400 |
| Authors | Poudel S, Aryal N, Lu C |
| Journal | PLoS One |
| Volume | 10 |
| Pages | e0121542 |
| Name | Accession | RPM | Chromosome | Start | End | Strand | Confidence |
|---|---|---|---|---|---|---|---|
| cas-MIR158b | MI0037159 | None | chr19 | 4419786 | 4419850 | + | - |
| cas-MIR827b | MI0037160 | None | chr7 | 2198467 | 2198540 | + | - |
| cas-MIR159c | MI0037161 | None | chr3 | 8167509 | 8167721 | + | - |
| cas-MIR156a | MI0037162 | None | chr16 | 24048680 | 24048772 | - | - |
| cas-MIR156b | MI0037163 | None | chr10 | 4620080 | 4620165 | - | - |
| cas-MIR156c | MI0037164 | None | chr10 | 4184127 | 4184219 | + | - |
| cas-MIR156d | MI0037165 | None | chr13 | 4416556 | 4416656 | - | - |
| cas-MIR156e | MI0037166 | None | chr8 | 1152639 | 1152739 | + | - |
| cas-MIR156f | MI0037167 | None | chr8 | 11005879 | 11005972 | + | - |
| cas-MIR156g | MI0037168 | None | chr15 | 29810671 | 29810760 | - | - |
| cas-MIR156h | MI0037169 | None | chr2 | 22073348 | 22073441 | - | - |
| cas-MIR156i | MI0037170 | None | chr2 | 15182645 | 15182741 | + | - |
| cas-MIR156j | MI0037171 | None | chr6 | 18107442 | 18107508 | + | - |
| cas-MIR156k | MI0037172 | None | chr13 | 13364811 | 13364911 | + | - |
| cas-MIR157a | MI0037173 | None | chr7 | 16306869 | 16306965 | + | - |
| cas-MIR157b | MI0037174 | None | chr15 | 9404996 | 9405181 | - | - |
| cas-MIR157c | MI0037175 | None | chr1 | 8089142 | 8089200 | - | - |
| cas-MIR157d | MI0037176 | None | chr14 | 25101955 | 25102095 | - | - |
| cas-MIR158a | MI0037177 | None | chr1 | 4255868 | 4255952 | - | - |
| cas-MIR159b | MI0037178 | None | chr14 | 8626645 | 8626825 | + | - |
| cas-MIR159a | MI0037179 | None | chr6 | 25477238 | 25477459 | + | - |
| cas-MIR160a | MI0037180 | None | chr6 | 21282450 | 21282532 | + | - |
| cas-MIR160b | MI0037181 | None | chr10 | 11828203 | 11828293 | - | - |
| cas-MIR161 | MI0037182 | None | chr14 | 24477396 | 24477505 | + | - |
| cas-MIR162a | MI0037183 | None | chr8 | 24063778 | 24063879 | + | - |
| cas-MIR164 | MI0037184 | None | chr5 | 257645 | 257723 | - | - |
| cas-MIR165a | MI0037185 | None | chr14 | 421550 | 421692 | + | - |
| cas-MIR165b | MI0037186 | None | chr2 | 834589 | 834721 | + | - |
| cas-MIR166a | MI0037187 | None | chr20 | 3722877 | 3722995 | + | - |
| cas-MIR166b | MI0037188 | None | chr5 | 34073758 | 34073873 | + | - |
| cas-MIR166c | MI0037189 | None | chr11 | 29041816 | 29041972 | - | - |
| cas-MIR166d | MI0037190 | None | chr11 | 34137148 | 34137235 | - | - |
| cas-MIR166e | MI0037191 | None | chr6 | 25720187 | 25720327 | + | - |
| cas-MIR166f | MI0037192 | None | chr2 | 27086939 | 27087031 | + | - |
| cas-MIR167a | MI0037193 | None | chr1 | 11226028 | 11226140 | + | - |
| cas-MIR167b | MI0037194 | None | chr5 | 34838611 | 34838719 | + | - |
| cas-MIR167c | MI0037195 | None | chr19 | 1702731 | 1702917 | - | - |
| cas-MIR168 | MI0037196 | None | chr18 | 2858964 | 2859069 | + | - |
| cas-MIR169a | MI0037197 | None | chr19 | 6155360 | 6155553 | - | - |
| cas-MIR169b | MI0037198 | None | chr8 | 9461148 | 9461235 | + | - |
| cas-MIR169c | MI0037199 | None | chr3 | 8799479 | 8799594 | + | - |
| cas-MIR169d | MI0037200 | None | chr10 | 9621277 | 9621364 | + | - |
| cas-MIR169e | MI0037201 | None | chr9 | 4687235 | 4687365 | - | - |
| cas-MIR169f | MI0037202 | None | chr15 | 6647086 | 6647202 | - | - |
| cas-MIR169g | MI0037203 | None | chr9 | 4684239 | 4684389 | - | - |
| cas-MIR170 | MI0037204 | None | chr2 | 29058364 | 29058436 | + | - |
| cas-MIR171a | MI0037205 | None | chr4 | 17926959 | 17927043 | + | - |
| cas-MIR171b | MI0037206 | None | chr3 | 5196194 | 5196282 | - | - |
| cas-MIR171c | MI0037207 | None | chr16 | 27650814 | 27650910 | - | - |
| cas-MIR172a | MI0037208 | None | chr16 | 7477891 | 7478001 | - | - |
| cas-MIR172b | MI0037209 | None | chr8 | 25985951 | 25986053 | + | - |
| cas-MIR172c | MI0037210 | None | chr19 | 5163464 | 5163567 | - | - |
| cas-MIR172d | MI0037211 | None | chr4 | 20385529 | 20385622 | + | - |
| cas-MIR173 | MI0037212 | None | chr15 | 14724141 | 14724234 | + | - |
| cas-MIR319a | MI0037213 | None | chr12 | 9490301 | 9490474 | - | - |
| cas-MIR319b | MI0037214 | None | chr11 | 28719157 | 28719328 | - | - |
| cas-MIR319c | MI0037215 | None | chr4 | 26293705 | 26293890 | + | - |
| cas-MIR390a | MI0037216 | None | chr4 | 24717695 | 24717778 | + | - |
| cas-MIR390b | MI0037217 | None | chr2 | 24169258 | 24169365 | + | - |
| cas-MIR393 | MI0037218 | None | chr4 | 25689842 | 25689948 | + | - |
| cas-MIR394 | MI0037219 | None | chr17 | 9433715 | 9433792 | + | - |
| cas-MIR395a | MI0037220 | None | chr3 | 11390094 | 11390179 | + | - |
| cas-MIR395b | MI0037221 | None | chr5 | 31459366 | 31459468 | + | - |
| cas-MIR395c | MI0037222 | None | chr17 | 12172713 | 12172830 | - | - |
| cas-MIR395d | MI0037223 | None | chr16 | 16722048 | 16722136 | - | - |
| cas-MIR396a | MI0037224 | None | chr15 | 20238925 | 20239069 | + | - |
| cas-MIR396b | MI0037225 | None | chr10 | 18158326 | 18158445 | + | - |
| cas-MIR397 | MI0037226 | None | chr2 | 2936787 | 2936895 | + | - |
| cas-MIR398a | MI0037227 | None | chr20 | 6570026 | 6570127 | + | - |
| cas-MIR398b | MI0037228 | None | chr4 | 3209179 | 3209269 | + | - |
| cas-MIR399a | MI0037229 | None | chr18 | 18070592 | 18070708 | - | - |
| cas-MIR399b | MI0037230 | None | chr5 | 8222288 | 8222389 | - | - |
| cas-MIR400 | MI0037231 | None | chr17 | 19090407 | 19090495 | + | - |
| cas-MIR403 | MI0037232 | None | chr4 | 29774480 | 29774583 | + | - |
| cas-MIR408 | MI0037233 | None | chr6 | 25897453 | 25897549 | + | - |
| cas-MIR472 | MI0037234 | None | chr17 | 5543516 | 5543653 | - | - |
| cas-MIR825 | MI0037235 | None | chr7 | 28990521 | 28990610 | + | - |
| cas-MIR827a | MI0037236 | None | chr16 | 2185297 | 2185383 | + | - |
| cas-MIR828 | MI0037237 | None | None | None | - | ||
| cas-MIR845 | MI0037238 | None | chr11 | 9967886 | 9967963 | + | - |
| cas-MIR857 | MI0037239 | None | chr12 | 20770573 | 20770827 | + | - |
| cas-MIR858 | MI0037240 | None | chr7 | 20989573 | 20989665 | + | - |
| cas-MIR860 | MI0037241 | None | chr8 | 10855613 | 10855704 | + | - |
| cas-MIR2111a | MI0037242 | None | chr1 | 3525551 | 3525644 | + | - |
| cas-MIR2111b | MI0037243 | None | chr13 | 433532 | 433614 | + | - |
| cas-MIR3435 | MI0037244 | None | chr15 | 683040 | 683195 | - | - |
| cas-MIR5139 | MI0037245 | None | chr14 | 19733884 | 19734000 | + | - |
| cas-MIR8171 | MI0037246 | None | chr2 | 13447418 | 13447518 | + | - |
| cas-MIR9560 | MI0037247 | None | chr8 | 12077148 | 12077230 | + | - |
| cas-MIR11592 | MI0037248 | None | chr14 | 12458730 | 12458813 | + | - |
| cas-MIR162b | MI0037249 | None | chr20 | 13153737 | 13153874 | + | - |