Stem-loop cas-MIR319a

Accession

MI0037213

Description

Camelina sativa cas-MIR319a precursor miRNA

Literature search

1 open access papers mention cas-MIR319a
(4 sentences)

Sequence

gagAGAGCUUCCUUGAGUCCAUUCacaggucgugauaugauccaauuagcuuccgacucauucauccaaauaccgagucaccaaacuucgaacuagacucguuaaaugaaugaaugaugcgguagacaaauuggaucauugauucucuuugauuggacugaagggagcucccuu
(((.((((((((((.((((((.(((.(((..((.(.(((((((((((.(((.(((..((((((((.((..((.((((((................)))))).))..)).))))))))..))).)).).)))))))))))).))..))).))).)))))).)))))))))).)))

Structure

   A          G      U   c   uc  g u           a -  u   ac        c  aa  c      accaaac 
gag GAGCUUCCUU AGUCCA UCa agg  gu a augauccaauu g cu ccg  ucauucau ca  ua cgaguc       u
||| |||||||||| |||||| ||| |||  || | ||||||||||| | || |||  |||||||| ||  || ||||||        
uuc cucgagggaa ucaggu agu ucu  ua u uacuagguuaa c ga ggc  aguaagua gu  au gcucag       u
   c          g      u   u   cu  g -           a a  u   gu        a  aa  u      aucaagc 

Annotation confidence Not enough data

Genome context

chr12: 9490301-9490474 [-]

Mature cas-miR319a

• Accession: MIMAT0045331
• Description: Camelina sativa cas-miR319a mature miRNA
• Sequence: 4 - AGAGCUUCCUUGAGUCCAUUC - 24
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25826400
   Identification of microRNAs and transcript targets in Camelina sativa by deep sequencing and computational methods
   Poudel S, Aryal N, Lu C
   PLoS One (2015) 10:e0121542