Stem-loop cas-MIR408

Accession

MI0037233

Description

Camelina sativa cas-MIR408 precursor miRNA

Literature search

1 open access papers mention cas-MIR408
(2 sentences)

Sequence

gagauagacagggaacaagcagagcauggauugaguuuacuaaaacacuaaacgacuuuugucucuacccAUGCACUGCCUCUUCCCUGGCucuuuc
((((.((.(((((((...((((.((((((...(((((((.........)))))(((....)))))...)))))).))))...))))))).)).))))

Structure

    u  a       caa    a      auu  ----------     cua 
gaga ag cagggaa   gcag gcaugg   ga          guuua   a
|||| || |||||||   |||| ||||||   ||          |||||   a
cuuu uC GUCCCUU   CGUC CGUAcc   cu          caaau   a
    c  G       CUC    A      cau  cuguuuucag     cac 

Annotation confidence Not enough data

Genome context

chr6: 25897453-25897549 [+]

Mature cas-miR408

• Accession: MIMAT0045356
• Description: Camelina sativa cas-miR408 mature miRNA
• Sequence: 71 - AUGCACUGCCUCUUCCCUGGC - 91
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25826400
   Identification of microRNAs and transcript targets in Camelina sativa by deep sequencing and computational methods
   Poudel S, Aryal N, Lu C
   PLoS One (2015) 10:e0121542