Stem-loop cas-MIR472

Accession

MI0037234

Description

Camelina sativa cas-MIR472 precursor miRNA

Sequence

guauguAUGGUCGAAGUAGGCAAAgucucaccuuuccagcagaucaacaaugaacuuuguugaauagaugccuggauuuuauaagguugagauccgcaaguuucgaguaagauuuugccuacuccgcccauaccauac
((((((((((.((.((((((((((((((.((((((((((((..(((((((......))))))).....)).)))))......)))))((((((......))))))....)))))))))))))).)).))))).)))))

Structure

     -     U  A              ---------------------c     ------     -  ---ga       ug 
guaug uAUGG CG AGUAGGCAAAgucu                      accuu      uccag ca     ucaacaa  a
||||| ||||| || ||||||||||||||                      |||||      ||||| ||     |||||||   
cauac auacc gc ucauccguuuuaga                      uggaa      agguc gu     aguuguu  a
     c     c  c              augagcuuugaacgccuagagu     uauuuu     c  agaua       uc 

Annotation confidence Not enough data

Genome context

chr17: 5543516-5543653 [-]

Mature cas-miR472

• Accession: MIMAT0045357
• Description: Camelina sativa cas-miR472 mature miRNA
• Sequence: 7 - AUGGUCGAAGUAGGCAAA - 24
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25826400
   Identification of microRNAs and transcript targets in Camelina sativa by deep sequencing and computational methods
   Poudel S, Aryal N, Lu C
   PLoS One (2015) 10:e0121542