Stem-loop cas-MIR157d

Accession

MI0037176

Description

Camelina sativa cas-MIR157d precursor miRNA

Literature search

1 open access papers mention cas-MIR157d
(1 sentences)

Sequence

gguuguugaCAGAAGAUAGAGAGCACUGAggaugcuaugcaaacacccgucaauguugauggugagucacaauaaaaagagagaagagcuagaccaucugcaucuccauuccuaugugcucucuaugcuucugucaucacc
(((.(.((((((((((((((((((((..(((((((...)))..((((.((((....))))))))..............((((..(((.........)))...))))...))))..))))))))))).))))))))).))))

Structure

   u u         -           UG    ----------------------------------ugcuaugcaaa    c    a 
ggu g ugaCAGAAG AUAGAGAGCAC  Agga                                             cacc guca u
||| | ||||||||| |||||||||||  ||||                                             |||| ||||  
cca c acugucuuc uaucucucgug  uccu                                             gugg uagu g
   - u         g           ua    uaccucuacgucuaccagaucgagaagagagaaaaauaacacuga    -    u 

Annotation confidence Not enough data

Genome context

chr14: 25101955-25102095 [-]

Mature cas-miR157d

• Accession: MIMAT0045285
• Description: Camelina sativa cas-miR157d mature miRNA
• Sequence: 10 - CAGAAGAUAGAGAGCACUGA - 29
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25826400
   Identification of microRNAs and transcript targets in Camelina sativa by deep sequencing and computational methods
   Poudel S, Aryal N, Lu C
   PLoS One (2015) 10:e0121542