Stem-loop cas-MIR167b

Accession

MI0037194

Description

Camelina sativa cas-MIR167b precursor miRNA

Literature search

1 open access papers mention cas-MIR167b
(3 sentences)

Sequence

ggaacaagugaagcugccagcaugaucuaucuuugguuaauagaggaauguggaaacauauuuugcuuaaacccaagcuaGGUCAUGCUGUGACAGCCUCACUccuucc
((((..(((((.(((((((((((((((((.(((.((((...((.((((((((....)))))))).))..)))).))).)))))))))))).).)))).)))))..))))

Structure

    ca     a    - -            u   u    aau  a        g 
ggaa  aguga gcug c cagcaugaucua cuu gguu   ag ggaaugug a
||||  ||||| |||| | |||||||||||| ||| ||||   || ||||||||  
ccuu  UCACU CGAC G GUCGUACUGGau gaa ccaa   uc uuuuauac a
    cc     C    A U            c   c    -au  g        a 

Annotation confidence Not enough data

Genome context

chr5: 34838611-34838719 [+]

Mature cas-miR167b

• Accession: MIMAT0045307
• Description: Camelina sativa cas-miR167b mature miRNA
• Sequence: 81 - GGUCAUGCUGUGACAGCCUCACU - 103
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25826400
   Identification of microRNAs and transcript targets in Camelina sativa by deep sequencing and computational methods
   Poudel S, Aryal N, Lu C
   PLoS One (2015) 10:e0121542